Non-Apis bee micro-organisms

Fungi

Microbe	Taxonomy	Citations (DOI or stable URL if available)
Antonospora scoticae	Eukaryota; Opisthokonta;Fungi;Microsporidia;Microsporidia incertae sedis; Antonospora	Fries et al. 1999
Ascosphaera acerosa	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson et al. 1998, Bissett et al. 1996
Ascosphaera aggregata	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson et al. 1998, McFrederick 2014
Ascosphaera asterophora	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson et al. 1998, Skou 1982
Ascosphaera atra	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson et al. 1998
Ascosphaera callicarpa	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Wynns et al. 2013
Ascosphaera celerrima	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson et al. 1998
Ascosphaera cinnamomea	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Skou 1988, Anderson & Gibson 1998
Ascosphaera duoformis	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson et al. 1998, Anderson & Gibson 1998
Ascosphaera flava	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson et al. 1998, Anderson & Gibson 1998
Ascosphaera fusiformis	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson et al. 1998, Skou 1988, Anderson & Gibson 1998
Ascosphaera larvis	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Bissett 1988, Hedtke et al. 2015
Ascosphaera major	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Holm and Skou 1972
Ascosphaera naganensis	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Hedtke et al. 2015, Skou 1988
Ascosphaera osmophila	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson et al. 1998, Klinger et al. 2013
Ascosphaera parasitica	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Skou 1988, Anderson & Gibson 1998
Ascosphaera pollenicola	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Bissett 1988, Anderson & Gibson 1998
Ascosphaera scaccaria	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson & Gibson 1998
Ascosphaera solina	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson et al. 1998, Anderson & Gibson 1998
Ascosphaera spp.	Eukaryota; Opisthokonta;Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Hedtke et al. 2015, Evison et al. 2012, Ravoet et al. 2014
Ascosphaera subcuticulata	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson et al. 1998, Anderson & Gibson 1998
Ascosphaera subglobosa	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Wynns et al. 2012
Ascosphaera torchio	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Torchio 1992
Ascosphaera variegata (synonym colubrina)	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Bissett 1988, Anderson & Gibson 1998, Wynns et al. 2012
Ascosphaera verrucosa	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Skou 1988, Anderson & Gibson 1998
Ascosphaera xerophila	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Anderson et al. 1998, Anderson & Gibson 1998, Skou 1988
Ascosphera proliperda	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ascosphaeraceae; Ascosphaera	Hedtke et al. 2015, Anderson 1998, Holm and Skou 1972.
Aspergillus flavus	Eukaryota; Opisthokonta;Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae	Batra and Bohart 1969, Batra, Batra and Bohart 1973, Linsley and MacSwain 1952
Aspergillus spp.	Eukaryota; Opisthokonta;Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae	Hedtke et al. 2015
Aspergillus tamarii	Eukaryota; Opisthokonta;Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae	Batra and Bohart 1969
Aspergillus terreus	Eukaryota; Opisthokonta;Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae	Batra, Batra, and Bohart 1973
Beauveria bassiana	Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Hypocreales; Cordycipitaceae; Beauveria	Leatherdale 1970
Fusarium solani	Eukaryota; Opisthokonta;Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes;Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium; Fusarium solani species complex	Batra and Bohart 1969
Microsporidia	Eukaryota; Opisthokonta; Fungi	Evison et al. 2012
Mucor sp.	Eukaryota; Opisthokonta;Fungi; Fungi incertae sedis; Mucoromycotina; Mucorales; Mucorineae; Mucoraceae	Batra and Bohart 1969
Nosema apis	Eukaryota; Opisthokonta; Fungi; Microsporidia; Apansporoblastina; Nosematidae	Graystock et al. 2013
Nosema bombi	Eukaryota; Opisthokonta; Fungi; Microsporidia; Apansporoblastina; Nosematidae	Cameron et al. 2011, Graystock et al. 2013; Li et al. 2012
Nosema ceranae	Eukaryota; Opisthokonta; Fungi; Microsporidia; Apansporoblastina; Nosematidae	Graystock et al. 2013, Furst et al. 2014, Ravoet et al. 2014; Li et al. 2012
Nosema undescribed spp.	Eukaryota; Opisthokonta; Fungi; Microsporidia; Apansporoblastina; Nosematidae	Li et al. 2012
Rhizopus sp.	Eukaryota; Opisthokonta;Fungi; Fungi incertae sedis; Mucoromycotina; Mucorales; Mucorineae; Rhizopodaceae	Batra and Bohart 1969, Linsley and MacSwain 1952
Trichothecium roseum	Eukaryota; Opisthokonta;Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreales incertae sedis;Trichothecium	Batra, Batra, and Bohart 1973

Viruses

Microbe	Taxonomy	Citations (DOI or stable URL if available)
Acute bee paralysis virus	Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Dicistroviridae; Aparavirus	McMahon et al. 2015
Black Queen Cell Virus	Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Dicistroviridae; Cripavirus	Singh et al. 2010, McMahon et al. 2015
Deformed Wing Virus	Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Iflaviridae; Iflavirus	Singh et al. 2010, Levitt 2013, Evison et al. 2012, Singh 2011, Dissertation, Furst et al. 2014; Genersch et al. 2006
Entomopox-like virus	Viruses; dsDNA viruses, no RNA stage; Poxviridae; Entomopoxvirinae; unclassified Entomopoxvirinae	Clark 1982
Israeli acute paralysis virus	Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Dicistroviridae; Aparavirus	Levitt et al. 2013, Singh et al. 2010, Singh 2011, Dissertation, Meeus et al. 2014
Kashmir bee virus	Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Dicistroviridae; Aparavirus	Meeus et al. 2014
Sac brood virus	Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Iflaviridae; Iflavirus	Singh et al. 2010, McMahon et al. 2015
Slow bee paralysis virus	Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Iflaviridae; Iflavirus	McMahon et al. 2015

Bacteria

Microbe	Taxonomy	Citations (DOI or stable URL if available)
Arsenophonus	Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae	McFrederick 2014, Gerth 2015
Paenibacillus sp.	Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae	Hedtke et al. 2015, McFrederick 2014, McFrederick 2012
Rickettsia	Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae	Gerth et al. 2015
Spiroplasma apis	Bacteria; Tenericutes; Mollicutes; Entomoplasmatales; Spiroplasmataceae	Ravoet et al. 2014, Meeus 2012
Spiroplasma melliferum	Bacteria; Tenericutes; Mollicutes; Entomoplasmatales; Spiroplasmataceae	Clark et al. 1985, Ravoet et al. 2014, Meeus 2012
Wolbachia	Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Wolbachieae	Evison et al. 2012, McFrederick et al. 2012, McFrederick et al. 2014, Gerth et al. 2015

Protists

Microbe	Taxonomy	Citations (DOI or stable URL if available)
Apicystis bombi	Eukaryota; Alveolata; Apicomplexa; Conoidasida; Gregarinasina; Neogregarinorida; Ophryocystidae; Apicystis	Graystock et al. 2013, Gamboa et al. 2015, Ravoet et al. 2014
Crithidia bombi	Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Crithidia	Shykoff and Schmidt-Hempel 1991 (among many others), Ravoet et al. 2014

Reference

These data come from supplemental material of:The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe InteractionsEngel et al., mBio, 2016; DOI: 10.1128/mBio.02164-15PubMed PMID: 27118586; PubMed Central PMCID: PMC4850275.